PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000630.1_g00030.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 189aa    MW: 21064.8 Da    PI: 7.0864
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000630.1_g00030.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.50.000212749123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             y C++Cg+ F +k     H+r H
  Itr_sc000630.1_g00030.1 27 YLCHKCGEGFGSKKAVYGHMRAH 49
                             66*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-52452No hitNo description
PROSITE profilePS5015710.9492754IPR007087Zinc finger, C2H2
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 189 aa     Download sequence    Send to blast
MNEEKLAKLN VVGDDEGDIG GFPSKDYLCH KCGEGFGSKK AVYGHMRAHS KRPKVPVPKK  60
RSTIGLKIAS AGPSFSTWNK SSEPVVSEID DEVKEAAACL MMLSRDTRSW NGERKTVVVN  120
GDDGKRTESE EVFVEKFIRA DDQVEKVNMK IGCQCSESGL QKVEVCMHRD DDYNKDLGGH  180
MRTHYYTVS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA69272231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35610.12e-07C2H2 family protein